Abstract.
Unlike reactions with no peculiar temporal behavior, in oscillatory
reactions concentrations can rise and fall spontaneously in a cyclic or
disorganized fashion. In this article, the software Mathematica
is used for a theoretical study of kinetic mechanisms of oscillating and
chaotic reactions. A first simple example is introduced through a three-step
reaction, called the Lotka model, which exhibits a temporal behavior characterized
by damped oscillations. The phase plane method of dynamic systems theory
is introduced for a geometric interpretation of the reaction kinetics without
solving the differential rate equations. The equations are later numerically
solved using the built-in routine NDSolve and the results are plotted.
The next example, still with a very simple mechanism, is the Lotka-Volterra
model reaction, which oscillates indefinitely. The kinetic process and
rate equations are also represented by a three-step reaction mechanism.
The most important difference between this and the former reaction is that
the undamped oscillation has two autocatalytic steps instead of one. The
periods of oscillations are obtained by using the discrete Fourier transform
(DFT)-a well-known tool in spectroscopy, although not so common in this
context. In the last section, it is shown how a simple model of biochemical
interactions can be useful to understand the complex behavior of important
biological systems. The model consists of two allosteric enzymes coupled
in series and activated by its own products. This reaction scheme is important
for explaining many metabolic mechanisms, such as the glycolytic oscillations
in muscles, yeast glycolysis, and the periodic synthesis of cyclic AMP.
A few of many possible dynamic behaviors are exemplified through a prototype
glycolytic enzymatic reaction proposed by Decroly and Goldbeter. By simply
modifying the initial concentrations, limit cycles, chaos, and birhythmicity
are computationally obtained and visualized.
Keywords.
Physical Chemistry; Kinetics; Computer Assisted Instruction; Computational
Chemistry.
Keywords Plus.
Biochemical System.